Copied template from submodule to this repo

Signed-off-by: Marko Korhonen <marko.korhonen@reekynet.com>

.gitmodules

@@ -1,3 +0,0 @@
-[submodule "metropolia-thesis-latex"]
-	path = metropolia-thesis-latex
-	url = git@github.com:panunu/metropolia-thesis-latex.git

metropolia-thesis-latex

@@ -1 +0,0 @@
-Subproject commit 2095bf3956147ad9c7ec7b6d9294ab28324d0bc2

tex/.gitignore

@@ -0,0 +1,20 @@
+*.aux
+*.log
+*.synctex*
+*.toc
+*.bbl
+*.blg
+.project
+.DS_Store
+*.acn
+*.acr
+*.alg
+*.fdb_latexmk
+*.fls
+*.glg
+*.glo
+*.gls
+*.ist
+*.out
+_minted-*
+*.pdf

tex/.latex.yml

@@ -0,0 +1,5 @@
+# In .latex.yml
+compiler: xelatex
+
+# In .latex.yml
+root_file: thesis.tex

tex/CONTRIBUTING.md

@@ -0,0 +1,5 @@
+## Editor
+
+### Indentation
+
+Use (2) spaces instead of tabs.

tex/LICENSE

@@ -0,0 +1,395 @@
+Attribution 4.0 International
+
+=======================================================================
+
+Creative Commons Corporation ("Creative Commons") is not a law firm and
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+Creative Commons may be contacted at creativecommons.org.

tex/README.md

@@ -0,0 +1,49 @@
+# Metropolia Thesis LaTeX Template
+
+## License
+
+<a rel="license" href="http://creativecommons.org/licenses/by/4.0/"><img alt="Creative Commons License" style="border-width:0" src="http://i.creativecommons.org/l/by/4.0/88x31.png" /></a><br /><span xmlns:dct="http://purl.org/dc/terms/" href="http://purl.org/dc/dcmitype/Text" property="dct:title" rel="dct:type">Metropolia Thesis LaTeX Template</span> by <span xmlns:cc="http://creativecommons.org/ns#" property="cc:attributionName">Panu Leppäniemi, Patrik Luoto and Patrick Ausderau</span> is licensed under a <a rel="license" href="http://creativecommons.org/licenses/by/4.0/">Creative Commons Attribution 4.0 International License</a>.
+
+Check comments in [main.tex](main.tex) for details. Especially what it means when licensing your own thesis when using this template.
+
+## Compiler
+
+Use XeLaTeX as a compiler.
+
+### Compilation
+
+Usual compilation sequence (minted package require external Python Pygments script to be installed ([check the docs](https://www.ctan.org/pkg/minted?lang=en)))
+
+    # minted require -shell-escape to run  external script. 
+    # -8bit avoid ^^I for tabs in minted.
+    $ xelatex -shell-escape -8bit main
+    # If any change in the bibliography
+    $ bibtex8 main
+    # If any change with the abbreviation or acronym
+    $ makeglossaries main
+    #Then compile again
+    $ xelatex -shell-escape -8bit main
+    #And if still some citation or label warnings, compile once more
+    $ xelatex -shell-escape -8bit main
+
+### Using Overleaf
+
+1. Create an account on [Overleaf](https://www.overleaf.com?r=2c9014ea&rm=d&rs=b)  (if not already have one)
+
+#### Using git
+
+Note: git version control != GitHub 😉 These instructions can be used with the Personal/Free subscription plan. While you would need the paid version of Overleaf to directly sync with GitHub. 
+
+1. Fork this project (optional (advantage of fork is to synchronize your github and overleaf projects with your local clone))
+1. Clone your fork (or this github project) to your local computer
+1. Follow the [instructions](https://www.overleaf.com/help/230-how-do-i-push-a-new-project-to-overleaf-via-git) to create a new Overleaf project from existing git repo
+1. Once done, open your Overleaf project and from Menu change "LaTeX Engine" to XeLaTeX and set ``main.tex`` as the main document
+
+#### Create new project from Zip
+
+1. Download this project as zip (or fork)
+1. Once logged in Overleaf, open Project section. Then New Project &rarr; Upload Project &rarr; select the zip (otherwise with the paid version you could sync with github (your fork))
+1. Once project opened: from the Menu change "compiler" to XeLaTeX and set ``main.tex`` as the main document
+
+
+

tex/biblio.bib

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+%----------------------------------------------------------------------------------------
+%	BOOK
+%----------------------------------------------------------------------------------------
+
+@book{tobias:book,
+author = "{Tobias Oetiker} and {Hubert Partl} and {Irene Hyna} and {Elisabeth Schlegl}",
+title = "The {N}ot {S}o {S}hort {I}ntroduction to \LaTeX{}2e",
+year = "2011",
+address = "Switzerland"
+}
+%publisher = "???",
+%isbn = {1234}
+
+@book{kopka:guide,
+author = "{Kopka, Helmut}",
+title = "Guide to \LaTeX{}",
+publisher = "Addison-Wesley",
+year = "2004",
+address = "Boston",
+isbn = {0321173856}
+}
+
+%----------------------------------------------------------------------------------------
+%	ARTICLE
+%----------------------------------------------------------------------------------------
+
+@article{un:udhr,
+  author = {international community, United Nations},
+  title = {The Universal Declaration of Human Rights},
+  url = {http://www.un.org/en/documents/udhr},
+  year = 1948
+}
+
+%----------------------------------------------------------------------------------------
+%	WEB
+%----------------------------------------------------------------------------------------
+
+@online{wikibooks:latex,
+title = "\LaTeX{}",
+year = "2012",
+publisher = "{wikibooks.org}",
+url = "http://en.wikibooks.org/wiki/LaTeX",
+lastchecked = "November~05, 2012"
+}
+%author = "{???}",

tex/chapters/0abbr.tex

@@ -0,0 +1,36 @@
+% Generate the glossary
+\makeglossaries
+
+% Acronyms, abbreviations, etc. 
+
+\newacronym{html}{HTML}{HyperText Markup Language}
+\newacronym{sql}{SQL}{Structured Query Language}
+\newacronym{io}{I/O}{Input/Output}
+\newacronym{ram}{RAM}{Random Access Memory}
+\newacronym{php}{PHP}{Hypertext Preprocessor}
+
+
+% Glossary entries
+
+\newglossaryentry{part_key}{
+	name={partition key}, 
+	description={a column or set of columns from the same table whose consolidated value decide the partition for a given data}
+}
+\newglossaryentry{thesis}{
+	name=thesis, 
+	description={a written essay one submitted for a university degree},
+	plural=theses
+}
+\newglossaryentry{latex}
+{
+    name=\LaTeX{},
+    description={Is a mark up language specially suited for scientific documents}
+}
+ 
+\newglossaryentry{maths}
+{
+    name=mathematics,
+    description={Mathematics is what mathematicians do}
+}
+
+

tex/chapters/0abstract_en.tex

@@ -0,0 +1,41 @@
+% Abstract in English
+%Most probably, you only need to change the text of the abstract. Everything else comes from chapter/0info.tex
+%If you do not have any appendix, you may delete \total{chapter} and replace with 0
+
+\pagestyle{abstract}
+\begin{otherlanguage}{english}
+{\renewcommand{\arraystretch}{2}%
+\begin{tabular}{ | p{4,7cm} | p{10,3cm} |}
+  \hline
+  Author(s) \newline
+  Title \newline\newline 
+  Number of Pages \newline
+  Date
+  & 
+  \makeatletter
+  \@author \newline
+  \@title \newline\newline %! if very long title over 2 lines, remove one \newline
+  \pageref*{LastPage} pages + \total{chapter} appendices \newline %! if no appendices, risk to count total of chapter :D
+  \IfLanguageName {finnish} {\foreignlanguage{english}{\longdate\@date}} {\@date}
+  \makeatother
+  \\ \hline
+  Degree & \metropoliadegree
+  \\ \hline
+  Degree Programme & \metropoliadegreeprogramme
+  \\ \hline
+  Professional Major & \metropoliaspecialisation
+  \\ \hline
+  Instructor(s) & \metropoliainstructors
+  \\ \hline
+  \multicolumn{2}{|p{15cm}|}{\vspace{-22pt}
+  Abstract content. To force newline between paragraph in the abstract, you must have both a empty line and the newline command. \newline
+
+  beginning of second paragraph\ldots
+  } \\[14cm] \hline
+  Keywords & \metropoliakeywords
+  \\ \hline
+\end{tabular}
+}
+\end{otherlanguage}
+\clearpage
+

tex/chapters/0abstract_fi.tex

@@ -0,0 +1,41 @@
+% Abstract in Finnish
+%Most probably, you only need to change the text of the abstract. Everything else comes from chapter/0info.tex
+%If you do not have any appendix, you may delete \total{chapter} and replace with 0
+
+\thispagestyle{tiivis}
+\begin{otherlanguage}{finnish}
+{\renewcommand{\arraystretch}{2}%
+\begin{tabular}{ | p{4,7cm} | p{10,3cm} |}
+  \hline
+  Tekijä(t) \newline
+  Otsikko \newline\newline 
+  Sivumäärä \newline
+  Aika
+  & 
+  \makeatletter
+  \@author \newline 
+  \otsikko \newline\newline %! if very long title over 2 lines, remove one \newline
+  \makeatother
+  \pageref*{LastPage} sivua + \total{chapter} liitettä \newline %! if no appendices, risk to count total of chapter :D
+  \pvm		
+  \\ \hline
+  Tutkinto & \tutkinto
+  \\ \hline
+  Tutkinto-ohjelma & \kohjelma
+  \\ \hline
+  Ammatillinen pääaine & \suuntautumis
+  \\ \hline
+  Ohjaaja(t) & \ohjaajat
+  \\ \hline
+  \multicolumn{2}{|p{15cm}|}{\vspace{-22pt}
+  Tämä on tiivistelmän ensimmäinen kappale. Tiivistelmän kappaleet loppuvat komentoon newline, jotta saadaan yksi tyhjä rivi aikaiseksi. \newline
+  
+  Tämä on tiivistlemän toinen kappale.
+  } \\[14cm] \hline
+  Avainsanat & \avainsanat
+  \\ \hline
+\end{tabular}
+}
+\end{otherlanguage}
+\clearpage
+

tex/chapters/0acknowledgement.tex

@@ -0,0 +1,13 @@
+% Acknowledgement
+% If relevant give a special thanks to the people who supported you during your thesis 
+% writing. 
+
+\pagestyle{empty}
+\chapter*{Acknowledgement}
+
+Thanks to Panu Leppäniemi, Patrik Luoto and Patrick Ausderau for the \LaTeX{} ~thesis template.
+
+Thanks to my cat who jump on my keyboard while the text was not saved :D
+
+\clearpage
+

tex/chapters/0info.tex

@@ -0,0 +1,40 @@
+% Global information (title of your thesis, your name, degree programme, major, etc.) 
+
+\def\thesislang{finnish} %change this depending on the main language of the thesis. 
+%\def\thesislang{english} % "english" is the only other supported language currently. If someone has the swedish, please contribute!
+
+\def\secondlang{english} %if the main language is Finnish (or Swedish), you must have 2 abstracts (one in Finnish (or Swedish) and one in English)
+%\def\secondlang{finnish} 
+%If the main language is English and that you are native Finnish (or Swedish) speaker, you must have also abstract in your native language on top of the English one.
+
+\author{Nimi/Name} %your first name and last name
+\def\thesisfi{Insinöörityö}%was Opinnäytetyö
+\def\thesisen{Thesis}
+
+\def\alaotsikko{Alaotsikko/Subtitle} %DISABLED, seems not to be an option with the new template (2018). If you really need it, uncomment and modify style/title.tex accordingly %if you don't have subtitle, empty {} it (but don't delete that line)
+
+%Finnish section, for title/abstract
+\def\otsikko{Opinnäytetyön otsikko}
+\def\tutkinto{Tutkinto (esim. Insinööri (AMK))} % change to your needs, e.g. "YAMK", etc.
+\def\kohjelma{Koulutusohjelma (esim. Tieto\textendash ja viestintätekniikka)}
+\def\suuntautumis{Ammatillinen pääaine (esim. Mobile Solutions)}
+\def\ohjaajat{
+Titteli Etunimi Sukunimi\newline
+Titteli Etunimi Sukunimi
+}
+\def\avainsanat{avainsanat}
+\def\pvm{\specialdate\today}
+
+%English section, for title/abstract
+\title{Your title here}
+\def\metropoliadegree {Bachelor of Engineering} % change to your needs, e.g. "master", etc.
+\def\metropoliadegreeprogramme {your degree programme (e.g. Information Technology)}
+\def\metropoliaspecialisation {your major option (e.g. Mobile Solutions)}
+\def\metropoliainstructors {
+First name Last name, Title (for example: Project Manager)\newline
+First name Last name, Title (for example: Principal Lecturer)
+}
+\def\metropoliakeywords {Keywords}
+\date{\longmonth\today}
+
+

tex/chapters/0license.tex

@@ -0,0 +1,35 @@
+% License of your thesis
+% If you wish to explain what it means. When you publish your thesis in https://theseus.fi
+% you will be able to choose between some Creative Commons licenses 
+% https://creativecommons.org
+% Adapt this example text to your taste.
+% This would also be the right place to explain the license you choose for the code you 
+% produced for your thesis.
+
+\pagestyle{empty}
+\chapter*{Licenses}
+\vspace{-20pt}
+\begin{center}
+ \includegraphics[width=80pt]{cc_by_sa}
+\end{center}\vspace{-32pt}
+This work is licensed under the Creative Commons Attribution-ShareAlike 4.0 International License. That means:\\
+\textbf{You are free to:}
+\vspace{-17pt} \begin{itemize}
+\item Share \textemdash copy and redistribute the material in any medium or format
+\item Adapt \textemdash remix, transform, and build upon the material
+\end{itemize}\vspace{-17pt}
+
+\textbf{Under the following terms:}
+\vspace{-17pt} \begin{itemize}
+\item Attribution \textemdash You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.
+\item ShareAlike \textemdash If you remix, transform, or build upon the material, you must distribute your contributions under the same license as the original.
+\item No additional restrictions \textemdash You may not apply legal terms or technological measures that legally restrict others from doing anything the license permits.
+\item Any of the above conditions can be waived if you get my permission
+\end{itemize}%\vspace{-17pt}
+
+
+To view a copy of this license, visit \url{http://creativecommons.org/licenses/by-sa/4.0/}.
+
+I decided to publish my thesis work under the Creative Commons Attribution-ShareAlike 4.0 International License because I strongly believe that you as reader deserve the freedom to copy, share and modify this work and if you do modify it, it is fair to give these same permissions to the others. A copy in electronic form of this work can be found in \url{https://some.place} with the \LaTeX{} source.
+
+\clearpage

tex/chapters/conclusion.tex

@@ -0,0 +1,7 @@
+% Conclusions
+
+\chapter{Conclusions}
+
+Check Final Year Project Guide for the content of Conclusions chapter.
+
+\clearpage %force the next chapter to start on a new page. Keep that as the last line of your chapter!

tex/chapters/introduction.tex

@@ -0,0 +1,7 @@
+% Introduction
+
+\chapter{Introduction}
+
+Check Final Year Project Guide for the content of introduction chapter.
+
+\clearpage %force the next chapter to start on a new page. Keep that as the last line of your chapter!

tex/chapters/methods.tex

@@ -0,0 +1,7 @@
+% Material and Methods
+
+\chapter{Material and Methods}
+
+Check Final Year Project Guide for the content of Material and Methods chapter.
+
+\clearpage %force the next chapter to start on a new page. Keep that as the last line of your chapter!

tex/chapters/projectSpec.tex

@@ -0,0 +1,7 @@
+% Project Specifications
+
+\chapter{Project Specifications}
+
+Check Final Year Project Guide for the content of Project Specifications chapter.
+
+\clearpage %force the next chapter to start on a new page. Keep that as the last line of your chapter!

tex/chapters/solution.tex

@@ -0,0 +1,7 @@
+% Proposed solution
+
+\chapter{Proposed solution}
+
+Check Final Year Project Guide for the content of Proposed solution chapter.
+
+\clearpage %force the next chapter to start on a new page. Keep that as the last line of your chapter!

tex/chapters/theory.tex

@@ -0,0 +1,7 @@
+% Theoretical background
+
+\chapter{Theoretical background}
+
+Check Final Year Project Guide for the content of Theoretical background chapter.
+
+\clearpage %force the next chapter to start on a new page. Keep that as the last line of your chapter!

tex/code/html5_sample.html

@@ -0,0 +1,10 @@
+<!DOCTYPE html>
+<html>
+	<head>
+		<meta charset="utf-8">
+		<title>HTML5 Document Template</title>
+	</head>
+	<body>
+		Some text here (visible to the users)
+	</body>
+</html>

tex/data.dat

@@ -0,0 +1,8 @@
+c	a
+5	564.08
+10	661.66
+20	1329.56
+50	2659.63
+100	4653.16
+200	10614.32
+1000	53184.27

tex/main.tex

@@ -0,0 +1,177 @@
+%----------------------------------------------------------------------------------------
+%	Metropolia Thesis LaTeX Template
+%----------------------------------------------------------------------------------------
+% License:
+% This work is licensed under the Creative Commons Attribution 4.0 International License. 
+% To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
+%
+% However, this license apply to this template. As a template, it is supposed to be 
+% modified for your own needs (with your thesis content). For this reason, if you use 
+% this project as a template and not specifically distribute it as part of a another 
+% package/program, we grant the extra permission to freely copy and modify these files as 
+% you see fit and even to delete this copyright notice. 
+% In short, you are free to publish your thesis under whatever license you wish, even 
+% keep the all rights reserved to you.
+%
+% Authors:
+% Panu Leppäniemi, Patrik Luoto and Patrick Ausderau
+%
+% Credits:
+% Panu Leppäniemi: abstract, def, cleaning,...
+% Patrik Luoto: title page, abstract in Finnish, abbreviation, math,...
+% Patrick Ausderau: initial version, style, table of content, bibliography, figure, 
+%                   appendix, table, source code listing...
+%
+% Please:
+% If you find mistakes, improve this template and alike, please contribute by sharing 
+% your improvements and/or send us your feedback there: 
+% https://github.com/panunu/metropolia-thesis-latex
+% And of course, if you improve it, add yourself as an author.
+%
+% Compiler:
+% Use XeLaTeX as a compiler.
+ 
+%----------------------------------------------------------------------------------------
+%	THESIS INFO
+%----------------------------------------------------------------------------------------
+
+% All general information (main language, title, author (you), degree programme, major 
+% option, etc.)
+% Edit the file chapters/0info.tex to change these information
+\input{chapters/0info.tex}
+
+%----------------------------------------------------------------------------------------
+%	GLOBAL STYLES
+%----------------------------------------------------------------------------------------
+
+% If you need extra package, etc. modify the style/style.tex file.
+% If you are using Windows OS, you will need to change default font to Arial in that 
+% style/style.tex file (or install Liberation Sans font to your system).
+% If you are using MacOS or linux, make sure you have Liberation Sans font installed.
+\input{style/style.tex}
+% Normally, you do not need to modify the title style. It's content comes from the 
+% chapters/0info.tex file.
+\input{style/title.tex}
+
+%----------------------------------------------------------------------------------------
+%	ABBREVIATION AND GLOSSARY
+%----------------------------------------------------------------------------------------
+
+% Add/edit all your acronyms, abbreviations, glossary entries, etc. definitions in 
+% chapters/0abbr.tex file.
+% You can have as many as you wish. Only the ones you use in your text (inserted with 
+% \gls{} command) will print in the Glossary/Lyhenteet.
+\input{chapters/0abbr.tex}
+
+%----------------------------------------------------------------------------------------
+%	DOCUMENT STARTS HERE...
+%----------------------------------------------------------------------------------------
+
+\begin{document}
+\counterwithout{listing}{chapter}
+
+%----------------------------------------------------------------------------------------
+%	TITLE PAGE
+%----------------------------------------------------------------------------------------
+
+\input{style/title_headers.tex}
+\maketitle
+\newpage
+
+%----------------------------------------------------------------------------------------
+%	ABSTRACT / Tiivistelmä
+%----------------------------------------------------------------------------------------
+
+% If you are international student writing in English, remove the Finnish abstract.
+% If you are Finnish citizen, you must have 2 abstracts, one in Finnish (or Swedish 
+% depending on your mother tongue) and one in English regardless of the main language of 
+% your thesis.
+\input{chapters/0abstract_fi.tex}
+\input{chapters/0abstract_en.tex}
+
+%----------------------------------------------------------------------------------------
+%	License? Acknowledgement?
+%----------------------------------------------------------------------------------------
+
+% Uncomment next line and edit chapters/0license.tex if you want license in your thesis.
+%\input{chapters/0license.tex}
+
+% Uncomment next line and edit chapters/0acknowledgement.tex if you want acknowledgements.
+%\input{chapters/0acknowledgement.tex}
+
+%----------------------------------------------------------------------------------------
+%	TABLE OF CONTENTS
+%----------------------------------------------------------------------------------------
+
+\input{style/toc.tex}
+
+%list of figure, tables would come here if relevant?
+
+%----------------------------------------------------------------------------------------
+%	Lyhenteet / Abbreviation
+%----------------------------------------------------------------------------------------
+
+% If you don't use abbreviations/glossary, remove the following line.
+\input{style/abbr.tex}
+
+%----------------------------------------------------------------------------------------
+%	CONTENT
+%----------------------------------------------------------------------------------------
+
+\input{style/content.tex}%reset page number to 1, etc.
+
+% Thesis content if you strictly follow the "Final Year Project guide". Of course, you 
+% can adapt to your specific needs (add more chapter, rename them, etc.).
+\input{chapters/introduction.tex}
+% uncomment what you need.
+%\input{chapters/projectSpec.tex}
+%\input{chapters/methods.tex}
+%\input{chapters/theory.tex}
+%\input{chapters/solution.tex}
+%\input{chapters/conclusion.tex}
+
+% Sample content to demonstrate LaTeX command. You will likely delete this line and the 
+% next \input{sample/*} lines. You are also safe to delete the sample/ folder and its
+% content once you refershed your LaTeX skills. Also check the appendix samples.
+\input{sample/1content.tex}
+\input{sample/2lorem.tex}
+\input{sample/3graph.tex}
+
+%----------------------------------------------------------------------------------------
+%	BIBLIOGRAPHY REFERENCES
+%----------------------------------------------------------------------------------------
+
+\input{style/biblio.tex}
+
+%----------------------------------------------------------------------------------------
+%	APPENDICES 
+%----------------------------------------------------------------------------------------
+
+\input{style/appendix.tex}
+%force smaller vertical spacing in table of content
+%!!! There can be some fun depending if the appendices have (sub)sections or not :D
+% You will have to play with these numbers and eventually add the \vspace line  before 
+% some \chapter and force another number.
+% To add more fun, time to time the table of content get wrong after a build :(
+\addtocontents{toc}{\vspace{11pt}}
+\pretocmd{\chapter}{\addtocontents{toc}{\protect\vspace{-24pt}}}{}{}
+
+\liite{1}% This is a hack to have right page numbering for each appendix. Make sure to 
+	 % use a unique number for each appendix.
+\input{sample/Xappendix1.tex}% Sample content to demonstrate appendix in LaTeX. You
+% are safe to delete this lines (and the next samples) once you refreshed your LaTeX 
+% skills (and safe to delete the sample folder and all its file too).
+
+\addtocontents{toc}{\vspace{11pt}}%fix vertical space for Table of Content
+\liite{2}
+\input{sample/Xappendix2.tex}
+
+\addtocontents{toc}{\vspace{11pt}}
+\liite{3}
+\input{sample/X_R_example.tex}
+
+
+%----------------------------------------------------------------------------------------
+%	THIS IS THE END 
+%----------------------------------------------------------------------------------------
+\end{document}

tex/sample/1content.tex

@@ -0,0 +1,177 @@
+%sample content to demonstrate LaTeX command.
+
+\chapter{Demonstration Content}
+
+This is a chapter to demonstrate some of the \LaTeX{} ~commands that you can use to format your text.
+This should be \textbf{bold} and this \textit{italic} and finally \textbf{\textit{bolditalic}}. When one want to use an abbreviation or acronym like \gls{html} using the \textbf{\textbackslash{}gls} command in \gls{latex}, the first time, it comes with it full version and for all next uses in it short \gls{html} form. Of course, when needed, the full version is available using e.g. the \textbf{\textbackslash{}acrlong} command.
+
+The defined terms like \gls{maths} use the same \textbf{\textbackslash{}gls} \gls{latex} command. The Capitalized can be obtained with \textbf{\textbackslash{}Gls}. Should be avoided; but to have all the abbreviations and terms, even the non-used ones, use the \textbf{\textbackslash{}glsaddall} command before printing the list of Abbreviations. 
+
+\section{Section with references}
+Here is an example how to cite a bibliography entry \cite{kopka:guide} using the \textquotedblleft\textbackslash{}cite\textquotedblright ~\gls{latex} command ~\cite[section 4.2]{tobias:book}. Note that a paragraph is added by forcing a new line.
+
+And let also try the figure (see figure \vref{fig:latex-cover}) and internal reference (with label and ref or vref). The reference can be done to any label, for example why not to appendix \ref{appx:first} or to appendix \ref{appx:second}? To note, \gls{latex} will place the figure to the best place (except with forcing). Let them float till the final of final edit\ldots ~then force them to not break a paragraph.%hugly hack... I'm sorry
+\begin{figure}[h]
+  \centering
+  \includegraphics[width=7.1cm]{LaTeX_cover}
+  \caption{\gls{latex} cover image (Copied from wikibooks.org (2012) \cite{wikibooks:latex}).}
+  \label{fig:latex-cover}
+\end{figure}
+
+Let's also try a long quote:
+From the Universal Declaration of Human Rights:
+\begin{quote}
+(1) Everyone has the right to education. Education shall be free, at least in the elementary and fundamental stages. Elementary education shall be compulsory. Technical and professional education shall be made generally available and higher education shall be equally accessible to all on the basis of merit.
+
+(2) Education shall be directed to the full development of the human personality and to the strengthening of respect for human rights and fundamental freedoms. It shall promote understanding, tolerance and friendship among all nations, racial or religious groups, and shall further the activities of the United Nations for the maintenance of peace.
+
+(3) Parents have a prior right to choose the kind of education that shall be given to their children. \cite[article 26]{un:udhr}
+\end{quote}
+
+\textit{Quisque augue} est, \textbf{elementum ac porttitor} non, porttitor ac orci. Donec hendrerit, ligula ac luctus egestas, sem dolor pretium nunc, sed vehicula magna diam a massa. Donec mattis, arcu et tempor mattis, risus tortor ultrices metus, nec sodales sem dolor eu elit.\vspace{-17pt} 
+\begin{itemize}
+\item \textbf{A small hack} with list
+\item is to force the vertical space 
+\item before and after the list
+\end{itemize}
+\vspace{-17pt} Nullam egestas enim at odio pellentesque bibendum. 
+
+\subsection{Subsection}
+Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+\reaction{\label{eq:reaktio}$\underset{\text{+II}}{\ce{2Fe^2+}}$ + $\underset{\text{+I\;-I}}{\ce{H2O2}}$ + $\underset{\text{+I\;-II}}{\ce{2H3O^+}}$ <=> $\underset{\text{+III}}{\ce{2Fe^3+}}$ + $\underset{\text{+I\;-II}}{\ce{4H2O}}$}
+Työn aluksi rauta(II)ionit hapetetaan rauta(III)ioneiksi väkevällä vetyperoksidilla, kuten reaktion~\ref{eq:reaktio} hapetusluvuista nähdään (rauta hapettuu, happi pelkistyy).  
+\reaction{Fe^3+( \emph{aq} ) + 3OH^-( \emph{aq} ) + $(x-1)$H2O( \emph{l} ) -> FeOOH $\cdot$ $x$(H2O)( \emph{s} )}
+Rauta(III)ionit saostetaan emäksen (\ce{NH3}) avulla ja saadaan tuotteeksi kidevedellinen rauta(III)hydroksidi. Saatu saostuma pestään \ce{NH4NO3}:lla.
+\reaction{FeOOH $\cdot$ $x$(H2O)( \emph{s} ) ->T[$\Delta$900-1000\celsius] Fe2O3( \emph{s} )}
+
+\subsection{Subsection with \Gls{maths}}
+Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit. Tertiäärinen butyylikloridi reagoi veden kanssa oheisen reaktion mukaisesti:
+\reaction{(CH3)3CCl + 2H2O -> (CH3)3COH+H3O+ +Cl-}
+Kyseessä on ensimmäisen kertaluvun reaktio, joten reaktion nopeus on
+\begin{align}
+v=-\frac{\mathrm{d}[\tn{t-ButCl}]}{\mathrm{d}t}=\frac{\mathrm{d}[\tn{HCl}]}{\mathrm{d}t}=k[\tn{t-ButCl}]
+\end{align}
+Jos tarkastellaan lähtöaineen t-butyylikloridin häviämistä saadaan
+\begin{align}
+\frac{\mathrm{d}[\tn{t-ButCl}]}{[\tn{t-ButCl}]}&=-k\mathrm{d}t \\
+\int \frac{\mathrm{d}[\tn{t-ButCl}]}{[\tn{t-ButCl}]}&=-k \int \mathrm{d}t \\
+\ln \int_{[\tn{t-ButCl}]_0}^{[\tn{t-ButCl}]} [\tn{t-ButCl}]&=-k\int_0^t t \\
+\ln \left( \frac{[\tn{t-ButCl}]}{[\tn{t-ButCl}]_0} \right)&=-kt
+\end{align}
+Ionivahvuus lasketaan kaavalla.
+\begin{align}
+I&=\frac{1}{2}\cdot\sum z_i^2c_i \\
+z_i&= \tn{ionin varausluku} \\
+c_i&= \tn{ionin konsentraatio}
+\end{align}
+Aktiivisuuskerroin $\gamma_\pm$ lasketaan kaavalla.
+\begin{align}
+\log \gamma_\pm &= -\left|z_+\cdot z_-\right|A\cdot I^{\frac{1}{2}} \\
+A &= \tn{0,509 (lämpötilassa 25\celsius}) \\
+I &= \tn{ionivahvuus} \\
+z &= \tn{ionien varaus}
+\end{align}
+
+\section{Section with Source Code}
+Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+%For sharelatex users, use space instead of tab to avoid ^^I
+\begin{code}
+  \begin{minted}{php}
+<?php
+$userName = $_POST["usern"];
+//maybe not?
+if ($userName){
+	?>
+	<h2>Hello <?php echo $userName; ?>!</h2>
+	<p>your message got received.</p>
+	<?php
+}
+?>
+\end{minted}
+  \captionof{listing}{Descriptive Caption Text (e.g. this code do blah)}
+  \label{code:testphp}
+\end{code}
+
+
+As see in listing \ref{code:testphp}, blah. It is also possible to have code inline, for example \mintinline{sql}{SELECT * FROM user WHERE age >= 18} that was SQL. 
+The lisings \ref{code:htmlfull} and \ref{code:htmlpart} show how to load code from an external source file. In the case of listing \ref{code:htmlpart} it only take few line out of the source code file.
+
+\begin{code}
+  \inputminted{html}{code/html5_sample.html}
+  \captionof{listing}{Some html code}
+  \label{code:htmlfull}
+\end{code}
+ Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus.
+ 
+ \begin{code}
+   \inputminted[firstline=3,lastline=6]{html}{code/html5_sample.html}
+  \captionof{listing}{The \mintinline{html}{<head>} section of an html page}
+  \label{code:htmlpart}
+\end{code}
+
+
+ Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+
+\section{Section with Table}
+Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+\begin{table}[h]
+  \centering
+  \caption{Some data}
+  %IMPORTANT the caption must be before the tabular, so it will be on top of the table (there are other tricks to force it on top; but this one is straitforward).
+  \begin{tabular}{| l | >{\centering\arraybackslash}p{.5\textwidth} |}
+    \hline
+    Test 1 & test 1234 test \\
+    \hline
+    Some more date comes here & with more values and if the text is very long it will disappear out of the box unless you force the column size :( \\
+    \hline
+  \end{tabular}
+  \label{table:some_data}
+\end{table}
+
+
+As presented in table \ref{table:some_data}: Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+\begin{table}[h]
+  \centering
+  \caption{Another table with tabularx}
+  \begin{tabularx}{.95\textwidth}{| l | >{\centering\arraybackslash} X |}
+    \hline
+    Test 1 & test 1234 test \\
+    \hline
+    Some more date comes here & with more values and if the text is very long it will disappear out of the box unless you force the table size :( \\
+    \hline
+  \end{tabularx}
+  \label{table:some_data2}
+\end{table}
+
+As presented in table \ref{table:some_data2}: Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+\begin{table}[htbp]
+  \centering
+  \caption{Booktabs example}
+    \begin{tabular}{rrrr}
+    \toprule
+    t (s) & [HCl] & [t-ButCl] & $\ln\frac{[t-ButCl]}{[t-ButCl]_0}$ \\
+    \midrule
+    0     & 4,02  & 160,88 & 0,00 \\
+    10    & 63    & 101,9 & -0,46 \\
+    20    & 115,2 & 49,7  & -1,17 \\
+    30    & 141,3 & 23,6  & -1,92 \\
+    40    & 157,9 & 7     & -3,13 \\
+    50    & 161   & 3,9   & -3,72 \\
+    60    & 164,3 & 0,6   & -5,59 \\
+    70    & 163,5 & 1,4   & -4,74 \\
+    80    & 163,8 & 1,1   & -4,99 \\
+    90    & 164,1 & 0,8   & -5,30 \\
+    100   & 164,3 & 0,6   & -5,59 \\
+    \bottomrule
+    \end{tabular}
+  \label{tab:thisislabel}
+\end{table}
+
+As presented in table \ref{tab:thisislabel}: Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+\clearpage %force the next chapter to start on a new page. Keep that as the last line of your chapter!

tex/sample/2lorem.tex

@@ -0,0 +1,11 @@
+%Dummy content to use some space...
+
+\chapter{Dummy Content}
+
+Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aliquam aliquam aliquam purus, in ornare nulla imperdiet molestie. Nam tempus erat eu dui rhoncus et vestibulum mi elementum. Ut porttitor elit sit amet justo dignissim sit amet sagittis massa egestas. Mauris sed dolor eget dui fermentum sodales ut eu nibh. 
+
+Quisque augue est, elementum ac porttitor non, porttitor ac orci. Donec hendrerit, ligula ac luctus egestas, sem dolor pretium nunc, sed vehicula magna diam a massa. Donec mattis, arcu et tempor mattis, risus tortor ultrices metus, nec sodales sem dolor eu elit. Nullam egestas enim at odio pellentesque bibendum. 
+
+Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+\clearpage %force the next chapter to start on a new page. Keep that as the last line of your chapter!

tex/sample/3graph.tex

@@ -0,0 +1,67 @@
+% Sample content to demonstrate tikzpicture
+
+\chapter{Graph}
+
+Data to plot the graph \ref{fig:stdplot} are in data.dat file.
+Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aliquam aliquam aliquam purus, in ornare nulla imperdiet molestie. Nam tempus erat eu dui rhoncus et vestibulum mi elementum. Ut porttitor elit sit amet justo dignissim sit amet sagittis massa egestas. Mauris sed dolor eget dui fermentum sodales ut eu nibh.
+\begin{figure}[htbp]
+  \centering
+    \begin{tikzpicture}
+        \pgfplotsset{width=12cm,
+        compat=1.3,
+        legend style={font=\footnotesize}}
+    \begin{axis}[
+    xlabel={c (mg/l)},
+    ylabel={A},
+    legend pos=north west,
+    ymajorgrids=true,
+    grid style=dashed
+]
+
+\addplot [only marks, blue] table {data.dat};
+\addplot [no markers, thick, red] table[
+x=c,
+y={create col/linear regression}] {data.dat};
+\addlegendentry{data}
+\addlegendentry{%
+$\pgfmathprintnumber{\pgfplotstableregressiona}x
+\pgfmathprintnumber[print sign]{\pgfplotstableregressionb}$}
+\end{axis}
+\end{tikzpicture}
+\caption{Simple linear regression plot (cannot get $r^2$ value)}
+\label{fig:stdplot}
+\end{figure}
+
+Quisque augue est, as seen in figure \ref{fig:stdplot} elementum ac porttitor non, porttitor ac orci. Donec hendrerit, ligula ac luctus egestas, sem dolor pretium nunc, sed vehicula magna diam a massa. Donec mattis, arcu et tempor mattis, risus tortor ultrices metus, nec sodales sem dolor eu elit. Nullam egestas enim at odio pellentesque bibendum. 
+
+Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+\section{Section}
+
+Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aliquam aliquam aliquam purus, in ornare nulla imperdiet molestie. Nam tempus erat eu dui rhoncus et vestibulum mi elementum. 
+\tikzstyle{palikka} = [rectangle, rounded corners, minimum width=1cm, minimum height=1cm, text centered, text width=2cm, draw=black, fill=red!30]
+\tikzstyle{arrow} = [thick,->,>=stealth]
+\begin{figure}[htbp]
+\centering
+\begin{tikzpicture}[node distance=2.75cm]
+\node[label=90:Label] (yksi) [palikka] {Lorem};
+\node (kaksi) [palikka, right of=yksi] {ipsum};
+\node (kolme) [palikka, below of=kaksi,  yshift=1cm] {dolor};
+\node (neljä) [palikka, left of=kolme] {sit};
+\node (viisi) [palikka, below of=neljä, yshift=1cm] {amet};
+\draw [arrow] (yksi) -- (kaksi);
+\draw [arrow] (kaksi) -- node[anchor=west] {tekstiä} (kolme);
+\draw [arrow] (kolme) -- (neljä);
+\draw [arrow] (neljä) -- (viisi);
+\end{tikzpicture}
+\caption{Example tikz-picture}
+\label{fig:tikz}
+\end{figure}
+
+As seen in figure \ref{fig:tikz}, ut porttitor elit sit amet justo dignissim sit amet sagittis massa egestas. Mauris sed dolor eget dui fermentum sodales ut eu nibh. 
+
+\section{Section}
+
+Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aliquam aliquam aliquam purus, in ornare nulla imperdiet molestie. Nam tempus erat eu dui rhoncus et vestibulum mi elementum. Ut porttitor elit sit amet justo dignissim sit amet sagittis massa egestas. Mauris sed dolor eget dui fermentum sodales ut eu nibh. 
+
+\clearpage %force the next chapter to start on a new page. Keep that as the last line of your chapter!

tex/sample/X_R_example.tex

@@ -0,0 +1,7 @@
+% Appendix to demonstrate R integration
+
+\chapter{R examples}
+
+TODO
+
+\clearpage %force the next chapter/appendix to start on a new page. Keep that as the last line of your appendix!

tex/sample/Xappendix1.tex

@@ -0,0 +1,29 @@
+% Appendix 
+% And demonstrate text references and bibliography references in appendix
+
+\chapter{Some Appendix}\label{appx:first}
+
+Note that every appendix will be a chapter.
+
+Sorry for the ugly hack on how to count the total pages per appendix.
+
+
+Of course with section and subsection.
+
+\section{Appendix Section}
+
+And you can cite \cite{tobias:book} stuff, it will go into the main bibliography.
+
+Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aliquam aliquam aliquam purus, in ornare nulla imperdiet molestie. Nam tempus erat eu dui rhoncus et vestibulum mi elementum. Ut porttitor elit sit amet justo dignissim sit amet sagittis massa egestas. Mauris sed dolor eget dui fermentum sodales ut eu nibh.
+
+Quisque augue est, elementum ac porttitor non, porttitor ac orci. Donec hendrerit, ligula ac luctus egestas, sem dolor pretium nunc, sed vehicula magna diam a massa. Donec mattis, arcu et tempor mattis, risus tortor ultrices metus, nec sodales sem dolor eu elit. Nullam egestas enim at odio pellentesque bibendum. 
+
+\subsection{With a Subsection}
+
+Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aliquam aliquam aliquam purus, in ornare nulla imperdiet molestie. Nam tempus erat eu dui rhoncus et vestibulum mi elementum. Ut porttitor elit sit amet justo dignissim sit amet sagittis massa egestas. Mauris sed dolor eget dui fermentum sodales ut eu nibh.
+
+Quisque augue est, elementum ac porttitor non, porttitor ac orci. Donec hendrerit, ligula ac luctus egestas, sem dolor pretium nunc, sed vehicula magna diam a massa. Donec mattis, arcu et tempor mattis, risus tortor ultrices metus, nec sodales sem dolor eu elit. Nullam egestas enim at odio pellentesque bibendum. 
+
+Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+\clearpage %force the next chapter/appendix to start on a new page. Keep that as the last line of your appendix!

tex/sample/Xappendix2.tex

@@ -0,0 +1,43 @@
+% Appendix
+% Just to have more appendices and more content
+
+\chapter{Dummy Appendix}\label{appx:second}
+
+Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aliquam aliquam aliquam purus, in ornare nulla imperdiet molestie. Nam tempus erat eu dui rhoncus et vestibulum mi elementum. Ut porttitor elit sit amet justo dignissim sit amet sagittis massa egestas. Mauris sed dolor eget dui fermentum sodales ut eu nibh.
+
+Quisque augue est, elementum ac porttitor non, porttitor ac orci. Donec hendrerit, ligula ac luctus egestas, sem dolor pretium nunc, sed vehicula magna diam a massa. Donec mattis, arcu et tempor mattis, risus tortor ultrices metus, nec sodales sem dolor eu elit. Nullam egestas enim at odio pellentesque bibendum. 
+
+Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aliquam aliquam aliquam purus, in ornare nulla imperdiet molestie. Nam tempus erat eu dui rhoncus et vestibulum mi elementum. Ut porttitor elit sit amet justo dignissim sit amet sagittis massa egestas. Mauris sed dolor eget dui fermentum sodales ut eu nibh.
+
+Quisque augue est, elementum ac porttitor non, porttitor ac orci. Donec hendrerit, ligula ac luctus egestas, sem dolor pretium nunc, sed vehicula magna diam a massa. Donec mattis, arcu et tempor mattis, risus tortor ultrices metus, nec sodales sem dolor eu elit. Nullam egestas enim at odio pellentesque bibendum. 
+
+Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aliquam aliquam aliquam purus, in ornare nulla imperdiet molestie. Nam tempus erat eu dui rhoncus et vestibulum mi elementum. Ut porttitor elit sit amet justo dignissim sit amet sagittis massa egestas. Mauris sed dolor eget dui fermentum sodales ut eu nibh.
+
+Quisque augue est, elementum ac porttitor non, porttitor ac orci. Donec hendrerit, ligula ac luctus egestas, sem dolor pretium nunc, sed vehicula magna diam a massa. Donec mattis, arcu et tempor mattis, risus tortor ultrices metus, nec sodales sem dolor eu elit. Nullam egestas enim at odio pellentesque bibendum. 
+
+Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aliquam aliquam aliquam purus, in ornare nulla imperdiet molestie. Nam tempus erat eu dui rhoncus et vestibulum mi elementum. Ut porttitor elit sit amet justo dignissim sit amet sagittis massa egestas. Mauris sed dolor eget dui fermentum sodales ut eu nibh.
+
+Quisque augue est, elementum ac porttitor non, porttitor ac orci. Donec hendrerit, ligula ac luctus egestas, sem dolor pretium nunc, sed vehicula magna diam a massa. Donec mattis, arcu et tempor mattis, risus tortor ultrices metus, nec sodales sem dolor eu elit. Nullam egestas enim at odio pellentesque bibendum. 
+
+Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aliquam aliquam aliquam purus, in ornare nulla imperdiet molestie. Nam tempus erat eu dui rhoncus et vestibulum mi elementum. Ut porttitor elit sit amet justo dignissim sit amet sagittis massa egestas. Mauris sed dolor eget dui fermentum sodales ut eu nibh.
+
+Quisque augue est, elementum ac porttitor non, porttitor ac orci. Donec hendrerit, ligula ac luctus egestas, sem dolor pretium nunc, sed vehicula magna diam a massa. Donec mattis, arcu et tempor mattis, risus tortor ultrices metus, nec sodales sem dolor eu elit. Nullam egestas enim at odio pellentesque bibendum. 
+
+Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+Lorem ipsum dolor sit amet, consectetur adipiscing elit. Aliquam aliquam aliquam purus, in ornare nulla imperdiet molestie. Nam tempus erat eu dui rhoncus et vestibulum mi elementum. Ut porttitor elit sit amet justo dignissim sit amet sagittis massa egestas. Mauris sed dolor eget dui fermentum sodales ut eu nibh.
+
+Quisque augue est, elementum ac porttitor non, porttitor ac orci. Donec hendrerit, ligula ac luctus egestas, sem dolor pretium nunc, sed vehicula magna diam a massa. Donec mattis, arcu et tempor mattis, risus tortor ultrices metus, nec sodales sem dolor eu elit. Nullam egestas enim at odio pellentesque bibendum. 
+
+Donec et sapien ac leo condimentum vulputate id et tellus. Maecenas hendrerit malesuada interdum. Aenean dignissim sem faucibus elit congue faucibus id non risus. Morbi at dui non tortor pellentesque consequat non eget urna. Cras in sapien dui, a tincidunt velit.
+
+
+\clearpage %force the next chapter/appendix to start on a new page. Keep that as the last line of your appendix!

tex/style/abbr.tex

@@ -0,0 +1,28 @@
+% Abbreviation and Glossary
+% Normally, you don't have to modify this file. Your abbreviations, etc. goes in 
+% ../chapters/0abbr.tex file.
+
+\begin{singlespacing}
+
+% \gsladdall would add all terms even if not used in your text.
+%\glsaddall
+  \addtocontents{toc}{\cftpagenumbersoff{chapter}}
+{
+	\titleformat{\section}
+	{\fontsize{13pt}{13pt}\bfseries\linespread{1}}
+	{\thesection}{.5cm}{}
+	%Adapt labelwidth (sorry for the ugly hack)
+	\setlist[description]{leftmargin=!, labelwidth=4em}
+	\IfLanguageName {finnish} {
+		\printacronyms[title=Lyhenteet]
+	}{
+		\printacronyms[title=List of Abbreviations]
+	}
+	\setlist[description]{leftmargin=!, labelwidth=7em}
+	\printglossary 
+	\setlist[description]{style=standard} % reset settings back to default
+}
+\addtocontents{toc}{\cftpagenumberson{chapter}} 
+\end{singlespacing}
+
+\clearpage

tex/style/appendix.tex

@@ -0,0 +1,24 @@
+% Appendix
+% Normally, you do not have to edit this file.
+
+%start appendix
+\appendix
+%no page number for appendix in table of content
+\addtocontents{toc}{\cftpagenumbersoff{chapter}}
+%appendix sections and subsections not in table of content
+\settocdepth{chapter}
+%add "Appendices" in the table of content
+\addappheadtotoc
+%have Appendix 1 (instead of Appendix A)
+\renewcommand{\thechapter}{\arabic{chapter}} 
+
+\newcommand\liite[1]{
+%each appendix restart page num to one
+\setcounter{page}{1}
+%special counter for appendix TODO: this is a ugly quick hack :( Should find a better way to count the page per appendix.
+\newtotcounter{appx#1}
+%overwrite the header
+\makeevenhead{plain}{}{}{\appname \thechapter \\ \thepage\,(\stepcounter{appx#1}\total{appx#1})}
+\makeoddhead{plain}{}{}{\appname \thechapter \\ \thepage\,(\stepcounter{appx#1}\total{appx#1})}}
+
+

tex/style/biblio.tex

@@ -0,0 +1,20 @@
+% Bibliography.
+% Normally you do not edit this file.
+% To add bibliography in your text, add them first in the biblio.bib file and 
+% reference them with the \cite{} command in your text.
+
+\IfLanguageName{finnish}{\bibliographystyle{vancouver_fi}}{\bibliographystyle{vancouver}}
+%line space
+%\singlespacing %removed otherwise the appendix are also single space
+\begin{flushleft}
+\begin{singlespacing}
+\bibliography{biblio}
+\end{singlespacing}
+\end{flushleft}
+
+%for conting the pages
+\label{LastPage}~
+
+%avoid that the last page of bib get appendix header
+\clearpage
+

tex/style/content.tex

@@ -0,0 +1,13 @@
+% Style for the main thesis content.
+% Normally, you should not edit this file.
+
+%page number always on top right; also for chapter "title" page
+\pagestyle{plain}
+\makeevenhead{plain}{}{}{\thepage}
+\makeoddhead{plain}{}{}{\thepage}
+
+\setcounter{page}{1} %page 1 should be Introduction
+
+\sloppy % enforce alignment to fully justified
+
+

tex/style/style.tex

@@ -0,0 +1,207 @@
+% Global style. Normally should not be edited. 
+% If you use windows OS, eventually change \setmainfont to Arial
+% Check around commit https://github.com/panunu/metropolia-thesis-latex/commit/a0c15ac77bab1a52c59c517a18080938e57bf5ef
+% to see how the font files were manually added (after downloading them: https://pagure.io/liberation-fonts/ )
+
+\documentclass[11pt,a4paper,oneside,article]{memoir}
+\usepackage[\secondlang,\thesislang]{babel}% finnish english swedish
+\usepackage{iflang}
+\usepackage{amsmath}
+\usepackage{amsfonts}
+\usepackage{amssymb}
+\usepackage{fontspec}
+\usepackage{tocloft}
+\usepackage{titlesec}
+\usepackage[hyphens]{url}
+\usepackage{mathtools}
+\usepackage{wallpaper}
+\usepackage{datetime}
+\usepackage[bookmarksdepth=subsection]{hyperref} % for automagic pdf links for toc, refs, etc.
+\usepackage[amssymb]{SIunits}
+\usepackage[version=3]{mhchem}
+\usepackage{pgfplots} %simple plots etc
+\usepackage{pgfplotstable}
+\usepackage{tikz} % mindmaps, flowcharts, piecharts, examples at http://www.texample.net/tikz/examples/
+\usetikzlibrary{shapes.geometric, arrows}
+
+
+\renewcommand{\dateseparator}{.}
+%condition for adding or not space in TOC
+\usepackage{etoolbox}
+%for compact list
+\usepackage{enumitem}
+%for block comment
+\usepackage{verbatim}
+%for "easier" references
+\usepackage{varioref}
+%forcing single line spacing in bibliography
+\DisemulatePackage{setspace}
+\usepackage{setspace}
+%including figure (image)
+\usepackage{graphicx}
+%change the numbering for figure
+\usepackage{chngcntr}
+%strike trough
+\usepackage{ulem}
+%euro symbol
+\usepackage{eurosym}
+%try to count
+\usepackage{totcount}
+%insert source code
+%\usepackage{listings}
+%require -8bit -shell-escape in the xelatex compile command
+%if compiling locally, consider options cachedir=minted,outputdir=~/.tex
+\usepackage[newfloat]{minted}
+\setminted{tabsize=2,linenos,breaklines,breaksymbolleft={\quad},baselinestretch=1}
+\setmintedinline{breaklines}
+\usepackage[justification=justified,singlelinecheck=false,font=small]{caption}
+\usepackage{color}
+%force the width of a table instead of column
+\usepackage{tabularx}
+\usepackage{booktabs} %why not booktabs? :3
+% Abbreviations, acronym and glossary
+\usepackage[acronym,toc,nonumberlist,section=chapter]{glossaries}%xindy,%toc, ,nomain
+\renewcommand*{\glsclearpage}{}
+
+\usepackage{float} % For forced figure location with modifier H (\begin{figure}[H])
+\usepackage{cite} % Make citations to match Metropolia thesis guide
+
+% change font of links in bibliography to same as other text
+\usepackage{url}
+\urlstyle{same}
+
+% change punctuation of multiple cites to semicolon instead of comma: [1; 2; 3]
+\renewcommand\citepunct{; }
+
+% citep-macro for reference with period inside square brackets [1.]
+\newcommand{\citep}[1]{
+ \renewcommand\citeright{.]}
+ \cite{#1}
+ \renewcommand\citeright{]}
+}
+
+%set date format to D.M.YYYY
+\newdateformat{specialdate}{\THEDAY.\THEMONTH.\THEYEAR}
+%set date format to D Month YYYY
+\newdateformat{longmonth}{\THEDAY~\monthname[\THEMONTH] \THEYEAR}
+
+\newcommand\tn[1]{\textnormal{#1}} %use \tn instead of \textnormal
+\newcommand\reaction[1]{\begin{equation}\ce{#1}\end{equation}} %\reaction{} for chemical reactions
+
+%NORMAL TEXT
+%all text, title, etc. in the same font: Arial
+%NOTE: fontname is case-sensitive
+\setmainfont{Liberation Sans}
+%line space
+\linespread{1.5}
+\AtBeginEnvironment{tabular}{\singlespacing}
+%\doublespacing
+%margin
+\usepackage[top=2.5cm, bottom=3cm, left=4cm, right=2cm, nofoot]{geometry}
+\setlength{\parindent}{0pt} %first line of paragraph not indented
+\setlength{\parskip}{16.5pt} %one empty line to separate paragraph
+%list with small line space separation
+\tightlists
+
+%IMAGE - FIGURE
+%the figures should be placed in the "illustration" folder
+\graphicspath{{illustration/}}
+%figure number without chapter (1.1, 1.2, 2.1) to (1, 2, 3)
+\counterwithout{figure}{chapter}
+%border around images
+\setlength\fboxsep{0pt}
+\setlength\fboxrule{0.5pt}
+%space after figure caption (and other float elements)
+\setlength{\belowcaptionskip}{-7pt}
+
+%TABLE
+\counterwithout{table}{chapter}
+
+%SOURCE CODE
+\newenvironment{code}{\captionsetup{type=listing}}{}
+\IfLanguageName {finnish} {\SetupFloatingEnvironment{listing}{name=Koodiesimerkki}} {}%was Listaus
+%\counterwithout{lstlisting}{chapter}
+%moved after begin document, otherwise does not compile
+
+%% set this format as the default for lstlisting
+%\DeclareCaptionFormat{empty}{}
+%\captionsetup[lstlisting]{format=empty}
+
+%TOC
+%change toc title
+\IfLanguageName {finnish} {\addto{\captionsfinnish}{\renewcommand*{\contentsname}{Sisällys}}} {}
+%remove dots
+\renewcommand*{\cftdotsep}{\cftnodots}
+%chapter title and page number not in bold
+\renewcommand{\cftchapterfont}{}
+\renewcommand{\cftchapterpagefont}{}
+%sub section in toc
+\setcounter{tocdepth}{2}
+%subsection numbered
+\setcounter{secnumdepth}{2}
+\renewcommand{\tocheadstart}{\vspace*{-15pt}}
+\renewcommand{\printtoctitle}[1]{\fontsize{13pt}{13pt}\bfseries #1}
+%\renewcommand{\aftertoctitle}{\vspace*{-22pt}\afterchaptertitle}
+%spacing afer a chapter in toc
+\preto\section{%
+  \ifnum\value{section}=0\addtocontents{toc}{\vskip11pt}\fi
+}
+%spacing afer a section in toc
+\renewcommand{\cftsectionaftersnumb}{\vspace*{-3pt}}
+%spacing afer a subsection in toc
+\renewcommand{\cftsubsectionaftersnumb}{\vspace*{-1pt}}
+%appendix in toc with "Appendix " + num
+\IfLanguageName {finnish} {
+  \renewcommand*{\cftappendixname}{Liite\space}
+  \renewcommand{\appendixtocname}{Liitteet}
+}{\renewcommand*{\cftappendixname}{Appendix\space}}
+%appendix header
+\IfLanguageName {finnish} {\def\appname{Liite\space}}{\def\appname{Appendix\space}}
+
+%TITLES
+%chapter title
+%\clearforchapter{\clearpage}
+\titleformat{\chapter}
+{\fontsize{13pt}{13pt}\bfseries\linespread{1}}%\clearpage
+{\thechapter}{.5cm}{}
+\titlespacing*{\chapter}{0pt}{.32cm}{9pt}
+\titleformat{\section}
+{\fontsize{12pt}{12pt}\linespread{1}}
+{\thesection}{.5cm}{}
+\titlespacing*{\section}{0pt}{14pt}{6pt}
+\titleformat{\subsection}
+{\fontsize{12pt}{12pt}\linespread{1}}
+{\thesubsection}{.5cm}{}
+\titlespacing*{\subsection}{0pt}{14pt}{6pt}
+
+
+%QUOTE
+\renewenvironment{quote}
+  {\list{}{\rightmargin=0pt\leftmargin=1cm\topsep=-10pt}%
+  \item\relax\fontsize{10pt}{10pt}\singlespacing}
+  {\endlist}
+
+%BIBLIOGRAPHY
+%bibliography title to be "references"
+%IF THE TITLE DON'T GET RENAMED PROPERLY, move that line after the \begin{document}
+\IfLanguageName {finnish} {\addto{\captionsfinnish}{\renewcommand*{\bibname}{Lähteet}}} {\renewcommand\bibname{References}}
+\makeatletter %reference list option change
+\renewcommand\@biblabel[1]{#1\hspace{1cm}} %from [1] to 1 with 1cm gap
+\makeatother %
+\setlength{\bibitemsep}{11pt}
+
+%count the appendices (since the chapter counter is reset after \appendix).
+%! require to complie 2 times
+\regtotcounter{chapter}
+
+
+\makepagestyle{tiivis}
+\makeevenhead{tiivis}{}{}{Tiivistelmä}
+\makeoddhead{tiivis}{}{}{Tiivistelmä}
+
+\makepagestyle{abstract}
+\makeevenhead{abstract}{}{}{Abstract}
+\makeoddhead{abstract}{}{}{Abstract}
+
+%footer on every pages
+\LLCornerWallPaper{1}{\IfLanguageName{finnish}{footer_fi}{footer_en}}

tex/style/title.tex

@@ -0,0 +1,34 @@
+% TITLE PAGE
+% Normally, you should not edit this file.
+
+\makeatletter
+\renewcommand{\maketitle}{
+\newgeometry{left=4.5cm}
+\thispagestyle{empty}
+\ThisULCornerWallPaper{1}{\IfLanguageName{finnish}{metropolia_fi}{metropolia_en}}
+%
+\vspace*{12.8cm}
+\tn{\Large\@author\\[1cm]\Huge\IfLanguageName {finnish}{\color[RGB]{155,50,35}\otsikko}{\color[RGB]{31,73,125}\@title}}%\\[22pt]\LARGE\alaotsikko\\[1.75cm]}
+
+\null\vfill
+\parbox{.7\linewidth}{
+\IfLanguageName {finnish}{
+  Metropolia Ammattikorkeakoulu\\
+  \tutkinto \\
+  \kohjelma \\
+  \thesisfi\\
+  \pvm
+} {
+  Helsinki Metropolia University of Applied Sciences\\
+  \metropoliadegree \\
+  \metropoliadegreeprogramme \\
+  \thesisen\\
+  \IfLanguageName {finnish}{\pvm}{\@date} % D.M.YYYY date format for Finnish. D Month YYYY for English
+}
+}
+\vspace*{-1.5cm}
+\clearpage
+\restoregeometry
+}
+\makeatother
+

tex/style/title_headers.tex

@@ -0,0 +1,10 @@
+% Title header. You should not edit that file.
+
+%page number always on the top right, clear the "chapter/section" head
+\pagestyle{myheadings}
+\markright{}
+%clear chapter "title" foot page
+\makeevenfoot{plain}{}{}{}
+\makeoddfoot{plain}{}{}{}
+
+

tex/style/toc.tex

@@ -0,0 +1,13 @@
+% Table of Content
+% Normally, you don't have to modify this file.
+% In case spacing of appendix/liite goes crazy, look in ../thesis.tex and look
+% for the hack described in APPENDICES.
+
+\makeevenhead{plain}{}{}{}
+\makeoddhead{plain}{}{}{}
+\pagestyle{empty} %remove page number in toc (if longer than 2 pages)
+\tableofcontents*
+\pagestyle{empty} %remove page number in toc (if longer than 1 pages)
+
+\clearpage
+